Chromosome-specific Microsatellite Multiplex Sets for Linkage Studies in the Domestic Dog.

Note: There is a typo in the first paragraph of the results section. The paper states that FH3245 was not able to be coamplified or coloaded. This should be FH3327 instead of FH3245.

* Overlapping marker: Click here for suggested labels.

Marker Name - X: Markers that did not work with our conditions and were not included in multiplex panels.

Marker

CFA

PIC

Type

MSS-1 Mplex

MSS-2 Mplex

Observed Allele Sizes

Published

Collie

Boykin Spaniel (n=28)

German Shepherd (n=64)

Shetland Sheepdog (n=50)

Great Dane (n=46)

Collie (n=24)

Havanese (n=122)

C01.424

CFA01

0.73

di

02

1.1

186

187

184, 186

 

 176, 182, 186, 188      

FH2793

CFA01

0.78

di

 

1.1

208

212, 218

193, 211, 213

 

 195, 209, 211, 213, 215      

REN112I02

CFA01

0.76

di

 

1.1

250

263

256, 262, 264

252, 256, 258, 260, 264

 252, 254, 258, 260, 261, 262      

FH2326

CFA01

0.83

tetra

 

1.1

251

260, 278

252, 256, 262, 266, 270

255, 259, 263, 265, 267, 269, 271, 275

 254, 256, 258, 262, 266, 270      

FH3413

CFA01

0.72

tetra

 

1.1

374

356

351, 359, 363, 375, 379, 387, 391

361, 365, 369, 373, 377

 350, 354, 358, 362, 370, 382, 386      

C00901

CFA01

0.54

di

 

1.1

105

111

103, 109

103, 111

 101, 103, 109, 111      

REN143K19

CFA01

0.50

di

 

1.2

138

136

133, 135

134

 134, 136      

C01.251

CFA01

0.61

di

 

1.2

146

138, 140

132, 136, 138, 142

137

 132, 134, 136, 138, 146, 152      

FH3325

CFA01

0.82

tetra

 

1.2

407

375, 387

366, 374, 378, 386, 390, 394, 398

374, 378, 382, 384, 386, 388, 392

 373, 375, 379, 381, 385, 389, 393, 397      

FH2309

CFA01

0.88

tetra

17

1.2

380

400

361, 383, 387, 391, 399, 403, 407

357, 371, 375, 399, 403, 407, 411, 415,

342, 346, 384, 392, 400, 408, 412, 416      

FH3300

CFA01

0.81

tetra

 

1.2

456

450

436, 440

417, 437, 447, 451, 467

 394, 404, 439, 440, 444, 446      

FH2294

CFA01

0.87

tetra

08

1.3

227

225

213, 221, 225, 229, 233, 237, 241

 

        

FH2663

CFA01

0.88

tetra

 

1.3

229

230, 244

226, 228, 234, 236, 238, 244, 248

223, 234

 226, 230, 236, 240, 242, 246, 248, 252      

FH3603

CFA01

0.88

tetra

 

1.3

387

389, 397

344, 348, 352, 356, 380, 388, 392

316, 317, 320, 324, 343, 347, 358, 372, 375, 380

 350, 354, 358, 362, 376, 382, 386, 390, 394      

FH3922

CFA01

0.86

tetra

 

1.3

484

530

470, 482, 486, 524, 528, 532, 536, 540, 544, 554

458, 474, 478, 486, 490, 500, 506, 514, 538, 542, 544, 546, 548, 550

 466, 472, 474, 482, 486, 488, 490, 496, 516, 528, 538, 542, 546      

REN70M14

CFA02

0.64

di

 

2.1

232

209, 215

 

175

 201, 205, 207, 213, 215      

REN303H07

CFA02

0.72

di

 

2.1

345

347

 

 

 346      

FH3210

CFA02

0.76

tetra

 

2.1

375

359, 363

 

 

 298, 306, 320, 360, 364, 368      

FH3965

CFA02

0.85

tetra

 

2.1

414

393, 409

 

 

 400, 404, 408, 412, 416      

C02.609

CFA02

0.52

di

 

2.2

180

181

179,181

181

 181, 193, 195      

FH2613

CFA02

0.81

tetra

 

2.2

189

149, 181

167, 177, 181, 185

150, 180, 188, 208, 210

 153, 173, 177, 181, 183, 185, 187, 191, 195, 199      

FH2890

CFA02

0.65

di

 

2.2

198

195

190, 192, 194, 196

190, 194, 196

 193, 195      

FH2132

CFA02

0.85

tetra

22

2.2

272

169, 251

226, 272, 276, 338, 348

251, 255, 259, 263, 267, 273, 277, 335, 339

 251, 263, 267, 271, 273, 275, 277, 281, 285, 335, 336, 339, 343, 347      

C02.342

CFA02

0.77

di

21

2.3

184

185, 191

182, 184, 186, 188, 190

186, 192

 186, 188, 190, 192, 194      

FH2608

CFA02

0.77

tetra

 

2.3

246

233, 284

233, 241, 245, 249, 350

240, 244, 248, 252

 232, 240, 244, 248, 252, 256      

FH2274

CFA02

0.71

tetra

 

2.3

320

283, 287

273, 277, 281, 319, 323, 327

275, 279, 283, 321

 276, 280, 284, 288, 322, 326      

FH3377

CFA03

0.85

tetra

 

3.1

246

193, 251

193, 197, 211, 237, 241

 

 183, 193, 197, 251, 255      

FH3464

CFA03

0.90

tetra

 

3.1

247

250, 272

245, 249

 

 241, 249, 275, 283      

REN161A12

CFA03

0.72

di

 

3.1

288

293

281, 283, 285, 287

 

 287, 293, 297      

FH3252

CFA03

0.81

tetra

 

3.1

456

448

 

 

 435, 443, 447, 481      

FH2316

CFA03

0.85

tetra

48

3.1 c

420

327, 453

326, 330, 334, 424, 440, 444, 448, 452

 

 325, 329, 333, 337, 405, 411, 421, 425, 429, 433, 437, 441, 457, 465      

REN260I04

CFA03

0.70

di

 

3.2

185

186

185

 

 182, 186, 188      

C03.629

CFA03

0.76

di

 

3.2

210

211, 215

206, 210, 212

 

 206, 210, 214      

FH3115

CFA03

0.49

di

 

3.2

234

230, 234

228, 230, 232

 

 227, 229, 231      

FH2145

CFA03

0.86

tetra

 

3.2

280

282

269, 279, 281, 283, 295

 

 279, 281, 285, 289, 297      

FH2302

CFA03

0.90

tetra

12

3.3

308

299

233, 285, 297, 311, 315, 319, 323

 

 294, 298, 302, 314, 318, 322, 326      

FH3396

CFA03

0.86

tetra

 

3.3

435

394, 434

278, 378, 382, 386, 404, 408, 412, 416, 424, 446, 450

 

 390, 406, 410, 422, 426, 430, 438      

AHT103

CFA04

0.70

di

01

4.1

80

74, 76

74, 78

78, 82

 75, 77, 79 78, 80, 84, 88 76, 78 76, 78, 80, 82

REN298N18

CFA04

0.76

di

 

4.1

190

184, 190

183, 185, 189, 197

185, 191

 184, 186, 190, 192 185, 191, 193 185, 187, 191, 193 186, 188, 192

FH2732

CFA04

0.86

di

 

4.1

215

217, 219

209, 213, 215

215

 197, 211, 215, 217 212, 214, 216 216, 218 212, 214, 216

REN74B13

CFA04

0.64

di

 

4.1

223

214

211, 215, 219

216, 232, 244

   213, 215, 217, 235 213, 219 214, 218, 235, 245

FH3310

CFA04

0.77

tetra

 

4.1

314

326, 362

297, 307, 311, 315, 319, 327, 351

296, 310, 314, 318, 322, 326, 364

 310, 314, 318, 322, 326, 330, 352, 360, 364 311, 315, 319, 323, 357 315, 319, 323, 327, 331, 361, 365 302, 308, 312, 316, 320, 356, 358, 366

REN303C04

CFA04

0.50

di

 

4.1

380

373

375, 377, 379

375

 373, 375, 377 369, 373, 375, 377 373, 375, 377 373, 375, 377

REN195B08

CFA04

0.54

di

 

4.2

136

136

126, 128, 130

129, 133, 137

 129, 133, 135, 137 129, 131, 133, 137 129, 133, 137 129, 133, 135

FH2776

CFA04

0.54

di

 

4.2

226

227, 231

211, 223, 227, 229

224, 228

 224, 228      

G07704

CFA04

0.50

di

 

4.2

246

246

234, 248, 254, 258

239, 249, 257

 235, 255, 257, 259      

FH2097

CFA04

0.70

tetra

 

4.2

288

288

271, 275, 279, 291

275, 279, 283, 287, 291, 299

 279, 283, 287, 291, 295      

FH3004

CFA05

0.84

tetra

 

5.1

319

283, 317

281, 285, 291, 297, 303, 307, 311

177, 189

        

FH3978

CFA05

0.90

tetra

 

5.1

331

323, 353

332, 336, 342, 346, 350, 352, 358, 362, 368

238, 242, 246, 250, 254

 242, 246, 250, 252, 254, 258, 262, 270      

REN175P10

CFA05

0.64

di

 

5.1

345

355

343, 351, 357, 359

206

        

DTR05.8

CFA05

0.76

tetra

 

5.1

398

392

342, 350, 368, 392

214, 218, 222, 226, 230

 214, 218, 222, 224, 226, 230, 234      

CPH14

CFA05

0.70

tri

 

5.1 c

193

195

188, 196, 198, 200

 

 194, 196, 200, 202 195, 199, 201 195, 197, 203  

FH3702

CFA05

0.73

tetra

 

5.2

200

188, 192

183, 187, 191, 199

272, 292, 294, 296, 298, 300, 302

 276, 280, 284, 292, 296, 308, 310, 312, 322, 326 177, 189, 193, 197 189, 193, 209  

FH3089

CFA05

0.54

di

 

5.2

227

205, 225

203, 217, 219, 223

355

 355, 359, 363 206, 218, 224 206, 224  

FH3320

CFA05

0.81

tetra

 

5.2

230

218, 226

216, 218, 220, 222, 224

340, 356, 378, 394, 398, 400, 402, 404, 408

 340, 384, 388, 390, 392, 398, 404 214, 216, 220, 222 220, 224, 228  

FH3928

CFA05

0.78

tetra

 

5.2

241

243, 251

234, 238, 248, 250, 266, 274

313, 325, 337, 343, 347, 371, 379, 383

 310, 312, 314, 316, 318, 320, 322, 324, 350, 354 247, 251, 255, 259, 263, 271 243, 247, 251, 255  

C05.771

CFA05

0.81

di

 

5.3

102

98

104, 108, 110, 112

110, 114

 98, 100, 102, 106, 110, 114 74, 102, 104, 108, 114 98, 112, 114, 116  

FH2140

CFA05

0.77

tetra

 

5.3

146

128, 142

127, 133, 149

127, 133, 137, 149, 153, 157

 127, 133, 137, 141, 143, 145, 161, 165 124, 128, 132, 136 128, 132, 142  

FH3278

CFA05

0.87

tetra

 

5.3

324

317, 321

320, 324, 328

310, 314, 318, 322

 314, 318, 322, 330, 336 314, 318, 326, 330, 382 310, 318, 336  

REN285I23

CFA05

0.58

di

 

5.3 c

244

236

234, 238

234, 240

 234, 236, 238, 242 234, 236, 238, 244 236, 242  

REN262G24 - X

CFA05

0.62

di

 

NA

158

158

 

 

        

FH2734

CFA06

0.82

di

 

6.1

205

201, 205

204, 206

204, 208, 210

 202, 204, 206      

FH3303

CFA06

0.83

tetra

 

6.1

300

281, 295

271, 283, 285, 287, 295, 299, 303

269, 277, 281, 293, 295, 297, 311, 319

 261, 271, 279, 283, 287, 289, 291      

FH2561

CFA06

0.94

tetra

 

6.1

283

320, 324

292, 296, 300, 304, 312, 316, 326

292, 296, 298, 306, 308, 312, 316, 318, 322,

258, 260, 262, 272, 276, 280, 284, 296, 304, 310, 312, 314, 316, 318, 326, 330, 340, 376      

FH2525

CFA06

0.80

tetra

38

6.1

342

565

548, 556, 568, 572

 

 555, 559, 561, 563, 565, 569, 571, 573, 577, 583, 585      

FH2164

CFA06

0.76

tetra

 

6.1 c

303

315, 335

314, 318, 322

304, 314, 318, 322, 326

        

FH2576

CFA06

0.84

tetra

 

6.2

312

311, 335

283, 305, 313, 323, 339, 343, 347

296, 304, 308, 310, 312, 324, 326, 330, 334, 338, 342, 347, 348

 316, 317, 321, 322, 326, 328, 330, 334, 338, 342, 344, 351      

FH2370

CFA06

0.86

tetra

 

6.2

380

386, 390

369, 377, 379, 383, 387, 395, 439

458, 462, 466, 470, 472, 478

 376, 380, 382, 390      

FH3933

CFA06

0.88

tetra

 

6.2

467

472, 476

451, 459, 463, 467, 471, 475, 499

 

 466, 470, 474, 478, 482, 486      

FH2119

CFA06

0.64

tetra

47

6.3

187

176, 180

180, 184, 190

170, 174, 180

 176, 180, 184, 194      

REN111L07

CFA06

~

di

 

6.3

186

189

189

189

 189, 193      

REN285H12

CFA06

0.42

di

 

6.3

258

259

252, 256

254, 257

 252, 254, 256      

FH2860

CFA07

0.66

di

 

7.1

171

173

170, 172, 174

165, 173, 177

 173, 177      

REN97M11

CFA07

0.65

di

 

7.1

195

199

194, 196, 198, 200

197, 201

 197, 199, 201      

REN162C04*

CFA07

0.66

di

 

7.1

203

201

197, 201

198, 202, 208

 197, 201, 203, 205      

FH3972

CFA07

0.90

tetra

 

7.1

313

231, 235

216, 220, 224, 228, 236, 280, 284, 304, 308, 312

 

 216, 220, 224, 228, 280, 282, 286, 288, 290, 292, 294, 298, 302, 306, 310      

REN143L20

CFA07

0.78

di

 

7.1

266

256, 260

260, 262, 264, 268

255, 261

 255, 261, 267      

VIASD10

CFA07

0.71

tetra

 

7.2

119

100

104, 116, 120

108, 112, 116

 100, 112, 116, 120      

FH2973

CFA07

0.78

tetra

 

7.2

244

234

210, 230

213, 227, 233, 237, 243

 212, 214, 234, 242, 248      

FH2226

CFA07

0.82

tetra

12

7.2

205

251, 255

205, 209, 247, 251

196, 200, 212, 242, 246, 250, 254, 258

 192, 196, 200, 204, 208, 242, 246, 250, 258, 262, 266, 270      

REN286O18 - X

CFA07

0.65

di

 

NA

306

306

 

 

        

FH3970 - X

CFA07

0.87

tetra

 

NA

394

394

 

 

        

C08.618

CFA08

0.82

di

03

8.1

199

195

108, 110, 116

 

 185, 191, 193, 195, 197, 199      

REN204K13

CFA08

0.48

di

 

8.1

249

249

245, 247, 249

 

 244, 246      

FH3241

CFA08

0.66

tetra

 

8.1

311

311

310, 314, 318, 322

 

 311, 315, 319, 325, 329      

FH3316

CFA08

0.82

tetra

 

8.1

337

334

332, 336, 340, 348

 

 3334, 336, 338, 342, 346, 348      

C08.410

CFA08

0.79

di

08

8.2

116

104, 106

186, 194, 196, 198

 

 105, 111, 115, 117, 123      

REN178J05

CFA08

0.72

di

 

8.2

343

339, 341

339, 343, 345, 349, 351

339, 345, 347

 339, 341, 343, 345, 347      

FH3425

CFA08

0.89

tetra

 

8.2

380

398, 402

286, 356, 360, 366, 370, 374, 394, 398, 402

279, 289, 297, 359, 361, 365, 369, 373, 379

 261, 283, 287, 353, 357, 359, 361, 363, 365, 367, 369, 405, 407, 409, 411, 423, 463      

FH2989

CFA08

0.88

tetra

 

8.2

459

469, 501

428, 436, 438, 442, 452, 456, 474, 480

438, 442, 450, 462, 468, 482, 490, 496, 508, 520, 572

 257, 421, 427, 441, 457, 459, 461, 463, 491, 497, 503      

C09.173

CFA09

0.78

di

 

9.1

110

107

99, 101, 103, 107, 109

100, 102, 108, 110

 100, 102, 108, 110      

G06401

CFA09

0.64

di

 

9.1

133

126

125, 133

126, 134

 126, 130, 132      

REN54L20

CFA09

0.66

di

 

9.1

153

141, 149

147, 149, 153

141, 147, 149, 153

 142, 148, 150, 154      

GALK1

CFA09

~

di

08

9.1

186

185

175, 179, 183

184

 180, 182, 184, 188      

REN287G01*

CFA09

0.54

di

 

9.1

187

186, 188

183, 185, 187

183, 185, 187, 189

 185, 187      

FH2263

CFA09

0.92

tetra

01

9.1

217

219, 223

209, 215, 223, 227, 229, 233, 239, 241, 243, 245, 253

202, 210, 212, 214, 222, 230, 234, 238, 242, 246, 250, 254

 214, 218, 222, 226, 230, 234, 238, 242, 246      

REN73K24

CFA09

0.58

di

 

9.2

203

203

 

201, 205

 197, 199, 201, 207      

FH2885

CFA09

0.76

di

 

9.2

209

195, 197

194, 196, 198, 200, 202, 204

198, 206

 198, 200, 204, 206, 208      

REN145P07

CFA09

0.66

di

 

9.2

218

218, 222

208, 220, 222, 226

208, 216, 220, 226,

208, 214, 216, 220